In Silico Characterization of Heavy Metal Binding Protein Predicted In the Genome Sequence of Lactobacillus pentosus KCA1

Main Article Content

Kingsley C. Anukam
Humphery B . Osadolor
Ikemefuna C. Uzochukwu

Abstract

Heavy metals, such as lead, cadmium, arsenic and mercury can contaminate the food chain and pose serious health problems.
We characterized the heavy metal binding protein predicted in the genome sequence of Lactobacillus pentosus KCA1.
Bioinformatic tools such as BLASTp, ClustalW and iterative threading assembly refinement (I-TASSER) server were used for
protein sequence similarity, secondary structure and 3-D model prediction for potential active binding sites. Two cysteine
residues were identified at position 12 and 15 (Cys12 and Cys15), separated by proline (P) and serine (S). The secondary
structure prediction revealed 2 alpha helices and 5 beta-strands. The 3-D model structure of KCA1_2798 has a confidence scoreof 1.26 that reflects a model of good quality with binding site residues predicted to occur at five positions (Thr11, Cys12, Ser14, Cys15, Gly63) of the KCA1_2798 sequence based on a protein (3iwlA) template. The heavy metal binding protein encoded in the genome sequence of L. pentosus KCA1 has laid a foundation for further investigation into its potential health applications.

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How to Cite
Anukam, K. C. ., Osadolor, H. B. ., & Uzochukwu, I. C. (2014). In Silico Characterization of Heavy Metal Binding Protein Predicted In the Genome Sequence of Lactobacillus pentosus KCA1. Nigerian Journal of Pharmaceutical and Applied Science Research, 3(2), 1–8. Retrieved from http://mail.nijophasr.net/index.php/nijophasr/article/view/59
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Articles
Author Biographies

Kingsley C. Anukam

TWAS Genomics Research Unit, Department of Medical Laboratory Science, School of Basic Medical Sciences, University of Benin, Nigeria.

Department of Medical Laboratory Science, School of Basic Medical Sciences, College of Medical Sciences, University of
Benin, Nigeria

Humphery B . Osadolor

Department of Medical Laboratory Science, School of Basic Medical Sciences, College of Medical Sciences, University of Benin, Nigeria

Ikemefuna C. Uzochukwu

Department of Pharmaceutical and Medicinal Chemistry, Faculty of Pharmaceutical Sciences, Nnamdi Azikiwe University, Awka 420281, Anambra State, Nigeria.

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